PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010092549.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 293aa    MW: 31971.2 Da    PI: 8.6011
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010092549.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00156988221
                    EETTTTEEESSHHHHHHHHH CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                    +C+ Cgk+F ++  L  H+r
  XP_010092549.1 69 PCTECGKRFWSWKALFGHMR 88
                    6******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0326890IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8896895IPR007087Zinc finger, C2H2
SuperFamilySSF576672.13E-76990No hitNo description
PfamPF139122.0E-77092IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.7E-47090IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SuperFamilySSF576672.13E-7216243No hitNo description
SMARTSM003554.6221243IPR015880Zinc finger, C2H2-like
PfamPF139125.3E-10221245IPR007087Zinc finger, C2H2
PROSITE profilePS501578.538221243IPR007087Zinc finger, C2H2
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSTAVPDSDL QLAVSPLHHH VVSTAANNPR KKRSKVIRFD NPKRTKSSPS PNGALSARKR  60
DNRPEITMPC TECGKRFWSW KALFGHMRCH PERQWRGINP PPNLLRGRSD LALIGSLATV  120
FSEEENDVAA SLLLLANGRP KSAETLEDQE VGDHIHDHDQ YGHGGFRFES SSCKKVFGSW  180
QALVGQRSSH KNVKGCFANG AVIVSEAEKK VFAVELGSGS HKCGICLRIF SSGQALGGHK  240
RCHWEKLGIS DDPPLLGLSQ ALNHSLDLNL PAPLEDDTFS SSSGMALDLT LAL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092549.10.0Zinc finger protein ZAT3
TrEMBLW9QYZ60.0W9QYZ6_9R
STRINGPOPTR_0004s21520.16e-69(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF6667710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.13e-72C2H2-like zinc finger protein